GeneID = 390581 is in our transporter list.
[Collapse all] [Expand all]
  • Gene general annotation
  • Data comes from NCBI-Gene
    Entrez GeneID 390581
    Gene Symbol ATP5HP1
    Aliases HsT18164
    Description ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1
    Organism Homo sapiens
    Location 15q15.2
    Genomic position NC_000015.9 43560028-43560622 minus strand (Reference GRCh37.p5 Primary Assembly) U E
  • KOBAS Annotation (Pathway/Disease Annotation)
  • PharmacoGenetics Related Genes/Drugs/Diseases
  • TaxicoGenetics Related Chemicals/Diseases/Pathways
  • Known Drugs in DrugBank
  • Transporter Substrate Information
  • Genomic Variation --- SNP
  • Data is integrated from dbSNP and HapMap, with functionally annotated by ANNOVAR
    Note: heterozygosity is not actually estimated from 1KG data, but is put in the same line for more compact representation.
    dbSNP rsIDchrpositionpop.alleleallele countfrequencyHapMap pop. diff.genotypegenotype count (frequency) functional annotation
    rs505249 15 43559960 CEU A / T 41 / 83 FET lg p = -35.28

    max diff AF = 0.669
    A/A / A/T / T/T 7 / 27 / 28 upstream: TGM5
    CHB 41 / 49 12 / 17 / 16
    JPT 47 / 39 12 / 23 / 8
    YRI 124 / 0 62 / 0 / 0
    1KG T (minor)1089 in 2178 = 0.50000 heterozygosity = 0.50000, with SE = 0.00000
    rs4924711 15 43560240 CEU C / A 130 / 0 FET lg p = -6.91

    max diff AF = 0.102
    C/C / A/C / A/A 65 / 0 / 0 intergenic: TGM5(dist=1185),TGM7(dist=8239)
    CHB 258 / 16 122 / 14 / 1
    CHD 205 / 13 96 / 13 / 0
    GIH 200 / 2 99 / 2 / 0
    JPT 203 / 23 90 / 23 / 0
    MEX 106 / 10 48 / 10 / 0
    YRI 126 / 0 63 / 0 / 0
    1KG A (minor)80 in 2178 = 0.03673 heterozygosity = 0.07076, with SE = 0.17428
    rs531910 15 43560607 ASW A / G 34 / 80 FET lg p = -60.08

    max diff AF = 0.504
    A/A / A/G / G/G 6 / 22 / 29 intergenic: TGM5(dist=1552),TGM7(dist=7872)
    CEU 155 / 71 51 / 53 / 9
    CHB 143 / 131 42 / 59 / 36
    CHD 140 / 78 50 / 40 / 19
    GIH 105 / 97 25 / 55 / 21
    JPT 133 / 93 41 / 51 / 21
    LWK 58 / 162 11 / 36 / 63
    MEX 71 / 45 22 / 27 / 9
    MKK 97 / 215 13 / 71 / 72
    TSI 130 / 74 39 / 52 / 11
    YRI 53 / 239 5 / 43 / 98
    1KG G (minor)977 in 2178 = 0.44858 heterozygosity = 0.49471, with SE = 0.05115
    rs491804 15 43560825 1KG A (minor)976 in 2178 = 0.44812 heterozygosity = 0.49462, with SE = 0.05160 intergenic: TGM5(dist=1770),TGM7(dist=7654)
    rs492743 15 43560945 1KG G (minor)978 in 2178 = 0.44904 heterozygosity = 0.49480, with SE = 0.05070 intergenic: TGM5(dist=1890),TGM7(dist=7534)
    Limited to 5 records in this page. Click here to view more.
  • Genomic Variation --- CNV
  • Haplotype Information
  • Data links to UCSC Genome Browser
    ContentHyperlinkDemo example
    HapMap LD Structure (hg18)UCSC
    1000 Genomes Phase I Haplotype Clustering (hg19)UCSC
    Gene Haplotype Allele (hg19)UCSC
  • ENCODE TFBS (Transcription Factor Binding Sites) Information
  • Epigenetic Information
  • Gene Ontology (GO)
  • Protein Sequence & Features
  • Protein Domain Information
  • Protein-Protein Interaction
  • UniGene EST Expression Data
  • Allen Brain Atlas - Mouse Brain Expression Data
  • RNA-seq Expression Data
  • External Links
  • EntrezGeneID 390581
    Gene Symbol and
    Genome Browser
    ATP5HP1
    UCSC Ensembl